[gunzip] Cancelled due to time limit
Currently, workflow is using 2h * task attempt. After 2 retries, this is 6h, which was not enough for an admitably large NovaSeq sample.
Error executing process > 'QC_ANALYSIS:ILLUMINA_QC:CORE:GUNZIP (PigHeat-dil5-rep3_S2_L001_R2_001)'
Caused by:
Process `QC_ANALYSIS:ILLUMINA_QC:CORE:GUNZIP (PigHeat-dil5-rep3_S2_L001_R2_001)` terminated with an error exit status (143)
Command executed:
gunzip -f PigHeat-dil5-rep3_S2_L001_R2_001.fastq.gz -c > PigHeat-dil5-rep3_S2_L001_R2_001.fastq
Command exit status:
143
Command output:
(empty)
Command wrapper:
slurmstepd: error: *** JOB 40796322 ON node110 CANCELLED AT 2022-11-09T17:32:39 DUE TO TIME LIMIT ***