From d0319970e43fc49222e5bf9871d0d2abd213c93a Mon Sep 17 00:00:00 2001
From: Florence Vinson <florence.vinson@inrae.fr>
Date: Wed, 28 Jun 2023 14:47:43 +0200
Subject: [PATCH 1/9] filter in post
---
paths/filters/get.yml | 24 ++++++++----------------
schemas/filters/Filter.yml | 8 ++++++--
schemas/filters/FiltersResponse.yml | 2 --
3 files changed, 14 insertions(+), 20 deletions(-)
diff --git a/paths/filters/get.yml b/paths/filters/get.yml
index 4d8cdf8..0fe8392 100644
--- a/paths/filters/get.yml
+++ b/paths/filters/get.yml
@@ -1,25 +1,17 @@
-get:
+post:
tags:
- Filters
summary: get Filter
description: get
operationId: getFilter
x-eov-operation-handler: filters
- parameters:
- - name: filter
- in: query
- description: the type of filter (Reaction2Gene, Reaction2Metabolite)
- required: true
- schema:
- type: string
- allowReserved: true
- - name: listid
- in: query
- description: the of id mysql in
- required: true
- allowReserved: true
- schema:
- type: string
+ requestBody:
+ content:
+ application/json:
+ schema:
+ type: object
+ items:
+ $ref: '../../schemas/filters/Filter.yml'
responses:
200:
description: successful operation
diff --git a/schemas/filters/Filter.yml b/schemas/filters/Filter.yml
index 8027e27..e273b89 100644
--- a/schemas/filters/Filter.yml
+++ b/schemas/filters/Filter.yml
@@ -1,7 +1,11 @@
type: object
description: "result filter object"
properties:
- result:
+ filter:
description: "list id"
type: string
- example: "12,123"
+ example: "Gene2Reaction"
+ listid:
+ description: "list id"
+ type: string
+ example: "1,12"
diff --git a/schemas/filters/FiltersResponse.yml b/schemas/filters/FiltersResponse.yml
index b9cac96..a7d79ee 100644
--- a/schemas/filters/FiltersResponse.yml
+++ b/schemas/filters/FiltersResponse.yml
@@ -5,5 +5,3 @@ allOf:
result:
description: 'result'
type: string
- items:
- $ref: '../../schemas/filters/Filter.yml'
--
GitLab
From a57826b7dd9e1e245e5d5536447b248be268f165 Mon Sep 17 00:00:00 2001
From: Florence Vinson <florence.vinson@inrae.fr>
Date: Wed, 28 Jun 2023 15:09:56 +0200
Subject: [PATCH 2/9] 0.4.0
---
package.json | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/package.json b/package.json
index 670be91..4449593 100644
--- a/package.json
+++ b/package.json
@@ -2,7 +2,7 @@
"name": "@metexplore/metexplore3-api-specs",
"private": false,
"description": "MetExplore 3 API specifications",
- "version": "0.3.0",
+ "version": "0.4.0",
"license": "Apache-2.0",
"devDependencies": {
"@redocly/cli": "^1.0.0-beta.125",
--
GitLab
From dbeb79d01a4094f352a909fd8aceea95e6e9d089 Mon Sep 17 00:00:00 2001
From: Florence Vinson <florence.vinson@inrae.fr>
Date: Thu, 29 Jun 2023 09:16:14 +0200
Subject: [PATCH 3/9] request description
---
paths/filters/get.yml | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/paths/filters/get.yml b/paths/filters/get.yml
index 0fe8392..7c05c9f 100644
--- a/paths/filters/get.yml
+++ b/paths/filters/get.yml
@@ -1,8 +1,8 @@
post:
tags:
- Filters
- summary: get Filter
- description: get
+ summary: filter identifiers of metabolic entities byids of other metabolic entities
+ description: filter identifiers of metabolic entities byids of other metabolic entities
operationId: getFilter
x-eov-operation-handler: filters
requestBody:
--
GitLab
From 90c811bcc20e0fdc0aa77ab01d4d31c82ede3974 Mon Sep 17 00:00:00 2001
From: Florence Vinson <florence.vinson@inrae.fr>
Date: Thu, 29 Jun 2023 09:35:31 +0200
Subject: [PATCH 4/9] filter description & type array & enum
---
schemas/filters/Filter.yml | 11 ++++++-----
schemas/filters/FiltersResponse.yml | 4 ++--
2 files changed, 8 insertions(+), 7 deletions(-)
diff --git a/schemas/filters/Filter.yml b/schemas/filters/Filter.yml
index e273b89..e7a6277 100644
--- a/schemas/filters/Filter.yml
+++ b/schemas/filters/Filter.yml
@@ -1,11 +1,12 @@
type: object
description: "result filter object"
properties:
- filter:
- description: "list id"
+ filtertype:
+ description: "type of filter"
type: string
+ enum: ['Gene2Pathway','Protein2Pathway',Enzyme2Pathway,MetabLeft2Pathway,MetabRight2Pathway,Reaction2Pathway,Gene2Reaction,Protein2Reaction,Enzyme2Reaction,MetabLeft2Reaction,MetabRight2Reaction,Pathway2Reaction,Gene2MetabLeft,Protein2MetabLeft,Enzyme2MetabLeft,Reaction2MetabLeft,Pathway2MetabLeft,Gene2MetabRight,Protein2MetabRight,Enzyme2MetabRight,Reaction2MetabRight,Metabolite2MetabRight,Pathway2MetabRight,Gene2Metabolite,Protein2Metabolite,Enzyme2Metabolite,Reaction2Metabolite,Pathway2Metabolite,Gene2Enzyme,Protein2Enzyme,MetabLeft2Enzyme,MetabRight2Enzyme,Reaction2Enzyme,Pathway2Enzyme,Compart2Enzyme,Gene2Protein,Enzyme2Protein,MetabLeft2Protein,MetabRight2Protein,Reaction2Protein,Pathway2Protein,Compart2Protein,Protein2Gene,Enzyme2Gene,MetabLeft2Gene,MetabRight2Gene,Reaction2Gene,Pathway2Gene,Protein2Compart,Enzyme2Compart,Metabolite2Compart,Reaction2Compart,Pathway2Compart]
example: "Gene2Reaction"
- listid:
- description: "list id"
- type: string
+ ids:
+ description: "array ids of "
+ type: array
example: "1,12"
diff --git a/schemas/filters/FiltersResponse.yml b/schemas/filters/FiltersResponse.yml
index a7d79ee..8d66ca7 100644
--- a/schemas/filters/FiltersResponse.yml
+++ b/schemas/filters/FiltersResponse.yml
@@ -3,5 +3,5 @@ allOf:
- type: object
- properties:
result:
- description: 'result'
- type: string
+ description: 'array of ids result filter'
+ type: array
--
GitLab
From 7198118a2fd57ab4e7e70c8c910a21a0528dcd74 Mon Sep 17 00:00:00 2001
From: Florence Vinson <florence.vinson@inrae.fr>
Date: Thu, 29 Jun 2023 09:49:10 +0200
Subject: [PATCH 5/9] change enum
---
schemas/filters/Filter.yml | 4 +++-
1 file changed, 3 insertions(+), 1 deletion(-)
diff --git a/schemas/filters/Filter.yml b/schemas/filters/Filter.yml
index e7a6277..829e2d4 100644
--- a/schemas/filters/Filter.yml
+++ b/schemas/filters/Filter.yml
@@ -4,9 +4,11 @@ properties:
filtertype:
description: "type of filter"
type: string
- enum: ['Gene2Pathway','Protein2Pathway',Enzyme2Pathway,MetabLeft2Pathway,MetabRight2Pathway,Reaction2Pathway,Gene2Reaction,Protein2Reaction,Enzyme2Reaction,MetabLeft2Reaction,MetabRight2Reaction,Pathway2Reaction,Gene2MetabLeft,Protein2MetabLeft,Enzyme2MetabLeft,Reaction2MetabLeft,Pathway2MetabLeft,Gene2MetabRight,Protein2MetabRight,Enzyme2MetabRight,Reaction2MetabRight,Metabolite2MetabRight,Pathway2MetabRight,Gene2Metabolite,Protein2Metabolite,Enzyme2Metabolite,Reaction2Metabolite,Pathway2Metabolite,Gene2Enzyme,Protein2Enzyme,MetabLeft2Enzyme,MetabRight2Enzyme,Reaction2Enzyme,Pathway2Enzyme,Compart2Enzyme,Gene2Protein,Enzyme2Protein,MetabLeft2Protein,MetabRight2Protein,Reaction2Protein,Pathway2Protein,Compart2Protein,Protein2Gene,Enzyme2Gene,MetabLeft2Gene,MetabRight2Gene,Reaction2Gene,Pathway2Gene,Protein2Compart,Enzyme2Compart,Metabolite2Compart,Reaction2Compart,Pathway2Compart]
+ enum: ['Gene2Pathway','Protein2Pathway',Enzyme2Pathway,Reaction2Pathway,Gene2Reaction,Protein2Reaction,Enzyme2Reaction,Pathway2Reaction,Gene2Metabolite,Protein2Metabolite,Enzyme2Metabolite,Reaction2Metabolite,Pathway2Metabolite,Gene2Enzyme,Protein2Enzyme,Reaction2Enzyme,Pathway2Enzyme,Compart2Enzyme,Gene2Protein,Enzyme2Protein,Reaction2Protein,Pathway2Protein,Compart2Protein,Protein2Gene,Enzyme2Gene,Reaction2Gene,Pathway2Gene,Protein2Compart,Enzyme2Compart,Metabolite2Compart,Reaction2Compart,Pathway2Compart]
example: "Gene2Reaction"
ids:
description: "array ids of "
type: array
+ items:
+ type: integer
example: "1,12"
--
GitLab
From 508e55926251ffa9376518fbdc4a30e14c4cd663 Mon Sep 17 00:00:00 2001
From: Florence Vinson <florence.vinson@inrae.fr>
Date: Thu, 29 Jun 2023 09:49:39 +0200
Subject: [PATCH 6/9] type
---
schemas/filters/FiltersResponse.yml | 2 ++
1 file changed, 2 insertions(+)
diff --git a/schemas/filters/FiltersResponse.yml b/schemas/filters/FiltersResponse.yml
index 8d66ca7..ce06af8 100644
--- a/schemas/filters/FiltersResponse.yml
+++ b/schemas/filters/FiltersResponse.yml
@@ -5,3 +5,5 @@ allOf:
result:
description: 'array of ids result filter'
type: array
+ items:
+ type: integer
--
GitLab
From f91726e8cc0e62e29026ad206af49b6ce6b5cf99 Mon Sep 17 00:00:00 2001
From: Florence Vinson <florence.vinson@inrae.fr>
Date: Thu, 29 Jun 2023 14:58:27 +0200
Subject: [PATCH 7/9] description
---
schemas/filters/FiltersResponse.yml | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/schemas/filters/FiltersResponse.yml b/schemas/filters/FiltersResponse.yml
index ce06af8..16dd774 100644
--- a/schemas/filters/FiltersResponse.yml
+++ b/schemas/filters/FiltersResponse.yml
@@ -3,7 +3,7 @@ allOf:
- type: object
- properties:
result:
- description: 'array of ids result filter'
+ description: 'array of ids'
type: array
items:
type: integer
--
GitLab
From 95780784f314b4ac3f2f6a3689e07e51c3edbf3d Mon Sep 17 00:00:00 2001
From: Ludovic Cottret <ludovic.cottret@inra.fr>
Date: Thu, 29 Jun 2023 15:05:00 +0200
Subject: [PATCH 8/9] Fix typo
---
paths/filters/get.yml | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/paths/filters/get.yml b/paths/filters/get.yml
index 7c05c9f..6bb875a 100644
--- a/paths/filters/get.yml
+++ b/paths/filters/get.yml
@@ -1,7 +1,7 @@
post:
tags:
- Filters
- summary: filter identifiers of metabolic entities byids of other metabolic entities
+ summary: filter identifiers of metabolic entities by ids of other metabolic entities
description: filter identifiers of metabolic entities byids of other metabolic entities
operationId: getFilter
x-eov-operation-handler: filters
--
GitLab
From 9c244315b6d4040e788f982dad1572295bc00512 Mon Sep 17 00:00:00 2001
From: Ludovic Cottret <ludovic.cottret@inra.fr>
Date: Thu, 29 Jun 2023 15:05:10 +0200
Subject: [PATCH 9/9] Fix typo
---
paths/filters/get.yml | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/paths/filters/get.yml b/paths/filters/get.yml
index 6bb875a..7b1d505 100644
--- a/paths/filters/get.yml
+++ b/paths/filters/get.yml
@@ -2,7 +2,7 @@ post:
tags:
- Filters
summary: filter identifiers of metabolic entities by ids of other metabolic entities
- description: filter identifiers of metabolic entities byids of other metabolic entities
+ description: filter identifiers of metabolic entities by ids of other metabolic entities
operationId: getFilter
x-eov-operation-handler: filters
requestBody:
--
GitLab