diff --git a/ancillaries/blacklist.txt b/ancillaries/blacklist.txt index c505a5cee7e06111fa35964d7ee5cec0539940a2..fca7932311d541a55b36a1ea9de20dadb12bd163 100644 --- a/ancillaries/blacklist.txt +++ b/ancillaries/blacklist.txt @@ -19,7 +19,7 @@ flagellum harvesting antenna host industry -IV secretion system +iv secretion system light - harvesting antenna medium membrane @@ -31,8 +31,8 @@ single polar flagellum spore supply tool -type III secretion system -type IV secretion system +type iii secretion system +type iv secretion system vector antenna clinical @@ -130,4 +130,12 @@ granular community communities well -wells \ No newline at end of file +wells +phylogenetic tree +coalescent tree +isomorphic tree +phyletic tree +gene tree +eukaryotic tree +tree of life +maximum-likelihood tree diff --git a/plans/tomap-habitats-generic.plan b/plans/tomap-habitats-generic.plan index 7ca9a1fd936c9bd3f684254978170b00c22ef11d..93683ca00ddf7c255c93b7f8e137573ceff3b901 100644 --- a/plans/tomap-habitats-generic.plan +++ b/plans/tomap-habitats-generic.plan @@ -253,7 +253,7 @@ <!-- Remove terms with blacklisted syntactic heads --> <delete-blacklisted-heads class="Action"> - <target>documents.sections.layer:habitats[@explain_significant-head in "ancillaries/blacklisted-heads.txt" and not (@concept-name =~ " " and (str:lower(@lemma-string) ?= str:lower(@concept-name) or @score == "1.0"))]</target> + <target>documents.sections.layer:habitats[str:lower(@explain_significant-head) in "ancillaries/blacklisted-heads.txt" and not (@concept-name =~ " " and (str:lower(@lemma-string) ?= str:lower(@concept-name) or @score == "1.0"))]</target> <action>remove:habitats</action> <removeFromLayer/> </delete-blacklisted-heads> @@ -449,7 +449,7 @@ <!-- remove blacklisted terms --> <delete-blacklisted class="Action"> - <target>documents.sections.layer:habitats[@selected == "true" and @lemma-string in "ancillaries/blacklist.txt"]</target> + <target>documents.sections.layer:habitats[@selected == "true" and str:lower(@lemma-string) in "ancillaries/blacklist.txt"]</target> <action>remove:habitats</action> <removeFromLayer/> </delete-blacklisted> diff --git a/plans/tomap-habitats.plan b/plans/tomap-habitats.plan index e5dcec1cb568c757f086707b006869242115ba68..f0f5f18e21f04644e6234bdcdbd73f604a463860 100644 --- a/plans/tomap-habitats.plan +++ b/plans/tomap-habitats.plan @@ -449,7 +449,7 @@ <!-- remove blacklisted terms --> <delete-blacklisted class="Action"> - <target>documents.sections.layer:habitats[@selected == "true" and @lemma-string in "ancillaries/blacklist.txt"]</target> + <target>documents.sections.layer:habitats[@selected == "true" and str:lower(@lemma-string) in "ancillaries/blacklist.txt"]</target> <action>remove:habitats</action> <removeFromLayer/> </delete-blacklisted>