Update Snakefile

Snakefile

@@ -287,8 +287,8 @@ rule SyRI_on_chrInput:
         
         ## Getting the list of sequences
         asmList=()
-        for file in {output.wrkdir}/*.fa; do
-            asm="$(basename $file .fa | cut -f1 -d"#").fa"
+        for file in {output.wrkdir}/*.fa.gz; do
+            asm="$(basename $file .fa.gz | cut -f1 -d"#").fa.gz"
             mv $file "$(dirname $file)/$asm"
             asmList+=("$asm")
         done