Feature/app sbml extract

Improve Met4J usability for Galaxy Workflow by adding utilities apps that exploit bioNetworks functions

• decomposeSBML to get bioentities in sbml as list of ids
• Reaction2Reactants to get list of metabolites from sbml + list of reactions
• Reaction2Gene to get list of genes from sbml + list of reactions
• ...

added met4j-toolbox label

requested review from @ludovic.cottret

marked this merge request as draft

added 1 commit

• 09c23a93 - Add app to turn SBML into lists of entities

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marked the checklist item decomposeSBML to get bioentities in sbml as list of ids as completed

added 1 commit

• 06239a8f - Add app to get substrates and/or products list from a list of reactions

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marked the checklist item Reaction2Reactants to get list of metabolites from sbml + list of reactions as completed

added 1 commit

• 3df40b4b - Add app to get gene list from a list of reactions and SBML GPR annotations

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marked the checklist item Reaction2Gene to get list of genes from sbml + list of reactions as completed

@ludovic.cottret all integration tests are done, let me know for Galaxy integration

marked this merge request as ready

changed target branch from master to develop

mentioned in commit 9afe5eb2

merged